Genome mining unveils a class of ribosomal peptides with two amino termini - Nature Communications

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Genome mining unveils a class of ribosomal peptides with two amino termini - Nature Communications
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Researchers discover new class of ribosomal peptide with hemolytic activity UofIllinois NatureComms

NRRL B-3501 were recovered on ISP2 agar medium at 37 °C until colony appears . A single colony was inoculated into 5 mL ISP2 liquid medium as seed culture and grown at 37 °C 250 rpm until saturation . 1 mL of the seed culture was then transferred into 50 mL fresh ISP2 liquid medium and cultivated for 18-20 h. Cells were then harvested by centrifugation at 3000 × g for 15 min and resuspended in 12 mL of cell resuspension buffer . Cell lysis enzymes , and 0.

Guide RNA was prepared through in vitro transcription. Briefly, 5 µM forward and reverse template oligonucleotides were mixed in NEBuffer 3.1. The mixture was incubated at 98 °C for 5 min, followed by slowly reducing the temperature with the rate of 0.1 °C/s until 10 °C was reached. A 2 µL aliquot of the annealed oligonucleotides was used as template for in vitro RNA transcription by HiScribe T7 quick high yield RNA Synthesis kit .

The digested genomic DNA was assembled with DNA receivers by the T4 DNA polymerase exo + fill-in method. DNA receivers were PCR amplified using primers listed in Supplementary Table. A 15 µL assembly reaction consists of 3–3.75 µg of digested genomic DNA, 15 ng of DNA receiver amplified from plasmid pBE44, 35 ng of DNA receiver amplified from plasmid pBE45, 1.5 µL of NEBuffer 2.1, and 0.75 U of T4 DNA polymerase.

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