RATTLE is a tool to perform reference-free reconstruction and quantification of transcripts using only Nanopore reads from EduEyras ivan_dela NBThighlight
]. A consensus from each column in the MSA is then extracted in the following way: for each read and each base of the read, the base is changed to the consensus if the consensus base occurs with at least 60% frequency, but not if this base has an error probability less than or equal to 1/3 times the average for the consensus base in that position of the alignment. Indels are treated similarly, but without the error constraint.
RATTLE outputs different files at different stages of its execution. In the clustering step, it can either output gene-clusters or transcript clusters in binary files. These files can then be used to extract a CSV file containing each read ID and the cluster it belongs to.
Norge Siste Nytt, Norge Overskrifter
Similar News:Du kan også lese nyheter som ligner på denne som vi har samlet inn fra andre nyhetskilder.
New Species of Giant Waterlily Identified | Sci-News.comVictoria boliviana marks the first discovery of a giant waterlily species in over a century and breaks the record as the largest in the world.
Les mer »
Laboratory Diagnostics and Testing Guidance for COVID-19: Laboratory Studies, Specimen Selection, Collection, and Transport, Nucleic Acid Detection
Les mer »
Trump Swings at His Own Anti-COVID Vaccine Supporters, Says He’s ‘Still Proud’ of Shot Despite BlowbackFormer President Donald Trump wanted his anti-vax supporters to know he remains “proud” of his administration’s work on the roll-out of COVID-19 vaccines, despite prior blowback over touting such.
Les mer »
Democrats and Republicans wage a quiet fight over ‘freedom’If it seems as if prominent Democratic voices have been referencing “freedom” more than usual lately, it's not your imagination. (via MaddowBlog)
Les mer »
North Carolina Looks to Remove Public EV Chargers, Probably to the TrashA bill currently in the works in the North Carolina legislature would allocate $50,000 to get rid of free public EV chargers unless free gas pumps are built alongside.
Les mer »